William Emmanuel S. Yu, AteneoCNG

General
WYU Home
WYU Blog
CNG Home

Resources
Software
Mirrors
Imperial Equation

Contact
Helpdesk

AMC 153 (First Semester, 2003-2004)

This is the website for the class "Parallel and Distributed Computing".

Annoucements

Final Projects and Presentations for SY 2003-2004 [dir]
Congratulations for completing the semester!
Finals on 18 Oct 2003 @ 1:30PM
Short Sample Programs available now [here]
Free Cut Today Sep 2 2003.
Laboratory Exercise II: Timing Exercises on 12 Aug 2003
SPRNG: A Parallel PRNG [HTML]
Laboratory Exercise I: Simple Examples on 22 Jul 2003
First Day of Classes on Tuesday, 17 Jun 2003, 1:30PM

Lecture Notes

Introduction to GNU Development Tools [PDF]
Building the AGILA HPCS [PDF]
Using the AGILA HPCS [PDF]
Parallel Programming with MPI: Basics [PDF]
Parallel Programming with MPI: Point to Point Communications [PDF]
Parallel Programming with MPI: Collective Communications [PDF]
Parallel Programming with MPI: Non-blocking Communications [PDF]
Parallel Programming with MPI: Persistent Communications [PDF]
Wilkinson's Book Slides [HTML]
C Programming Slide by Andrew Vizcarra [PDF] updated 11/10/2001
Short Sample Programs available now [DIR]

Resources

AGILA High Performance Computing System User's Manual [PDF] [HTML]
Putty SSH Client for Win32 [EXE]
PSCP SCP Client for Win32 [EXE]
PSFTP SCP Client for Win32 [EXE]
GUI-based SCP Client for Win32 [EXE]

Documentation for Programs Available in the AGILA HPCS

Message Passing Interface
LAM-MPI Primer [PDF]
MPI Quick Reference [PDF]
MPI Java Bindings [PDF]

Groups, Algorithms and Programming
GAP Reference Guide [PDF]
GAP Tutorial [PDF]
Parallel GAP Manual [PDF]

Parallel Extensible Toolkit for Scientific Computing
PETSc Manual [PDF]

Fifth Generation Mesoscale Model (MM5)
MM5 Tutorial [HTML]
MM5 Source Code Documentation [HTML]
MM5 Model Description Documentation [HTML]
Terrain Preprocessor Documentation [HTML]
DGRAW Documentation [HTML]

NWCHEM High Performance Computational Chemistry Software
NWCHEM Users' Guide [PDF]
NWCHEM Programmers' Guide Part I [PS]
NWCHEM Programmers' Guide Part II [PS]

NAMD Scalable Molecular Dynamics
NAMD Users' Guide [HTML]

Cluster Building References

Parallel Processing HOWTO [HTML] [PDF]
Beowulf HOWTO [HTML] [PDF]
Cluster HOWTO [HTML] [PDF]

It's hip2b2
Mobile, Security, Web 2.0, Pipe Dreams and More
Barry, the Blackberry Sync Tool, Built for Fedora 9
iPhone 1.1.2 and 1.1.3 OTB Hack
Patch to Allow Breaking the First Name Field into Multiple Lines
Patch to Allow Removing of Dates in GenealogyJ’s Graphical Tree Report
Barry, the Blackberry Sync Tool, Built for Fedora 8
Upgrading to Fedora 8 on a Dell Latitude D510
Hoy Smokes! Why do Philippine Disgruntled Soldiers Like Hotels?
Some Quick Shots of Macau
AMC 153 SY 2006-2007 Pre-Final Grades
Wanted Researchers: Open to Ateneo CS, MIS and ECCE Students

Slashdot
News for nerds, stuff that matters
Senate Votes To Empower Parents As Censors
Plug-In Hybrids Aren't Coming, They're Here
No Naked Black Holes
Linux Turns 17 Today
Jobs Rumor Debacle Besmirches Citizen Journalism
Mimicking Electric Eel Cells
A Wikipedia Conspiracy and the Wall Street Meltdown
Encrypted Images Vulnerable To New Attack
Birth of a New African Ocean
Dispelling Myths About Geomagnetic Reversal
Optical Character Recognition Still Struggling With Handwriting
Gov't Database Errors Leading To Unconstitutional Searches?
Getting Paid To Abandon an Open Source Project?
Netbook Return Rates Much Higher For Linux Than Windows
Venture Capitalism To the Rescue

Stuff
v7ndotcom elursrebmem
It's hip2b2

For any Questions, Comments or Suggestions
please email me at wyu at ateneo dot edu

Academic and Course Website (Release 3.2)
© 2001-2005, William Emmanuel S. Yu