William Emmanuel S. Yu, AteneoCNG
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AMC 153 (First Semester, 2004-2005)

This is the website for the class "Parallel and Distributed Computing".


Annoucements

  • Pre-final Grades found here
  • First Day of Classes on Tuesday, 15 Jun 2003, 1:30PM


Lecture Notes

Penguin Power: Linux and Commodity Parallel Computing [PDF]
Introduction to GNU Development Tools [PDF]
Building the AGILA HPCS [PDF]
Using the AGILA HPCS [PDF]
Parallel Programming with MPI: Basics [PDF]
Parallel Programming with MPI: Point to Point Communications [PDF]
Parallel Programming with MPI: Collective Communications [PDF]
Parallel Programming with MPI: Non-blocking Communications [PDF]
Parallel Programming with MPI: Persistent Communications [PDF]
Wilkinson's Book Slides [HTML]
C Programming Slide by Andrew Vizcarra [PDF] updated 11/10/2001
Short Sample Programs available now [DIR]


Resources

AGILA High Performance Computing System User's Manual [PDF] [HTML]
Putty SSH Client for Win32 [EXE]
PSCP SCP Client for Win32 [EXE]
PSFTP SCP Client for Win32 [EXE]
GUI-based SCP Client for Win32 [EXE]


Documentation for Programs Available in the AGILA HPCS

Message Passing Interface
LAM-MPI Primer [PDF]
MPI Quick Reference [PDF]
MPI Java Bindings [PDF]

Groups, Algorithms and Programming
GAP Reference Guide [PDF]
GAP Tutorial [PDF]
Parallel GAP Manual [PDF]

Parallel Extensible Toolkit for Scientific Computing
PETSc Manual [PDF]

Fifth Generation Mesoscale Model (MM5)
MM5 Tutorial [HTML]
MM5 Source Code Documentation [HTML]
MM5 Model Description Documentation [HTML]
Terrain Preprocessor Documentation [HTML]
DGRAW Documentation [HTML]

NWCHEM High Performance Computational Chemistry Software
NWCHEM Users' Guide [PDF]
NWCHEM Programmers' Guide Part I [PS]
NWCHEM Programmers' Guide Part II [PS]

NAMD Scalable Molecular Dynamics
NAMD Users' Guide [HTML]


Cluster Building References

Parallel Processing HOWTO [HTML] [PDF]
Beowulf HOWTO [HTML] [PDF]
Cluster HOWTO [HTML] [PDF]
 
Google
It's hip2b2
Mobile, Security, Web 2.0, Pipe Dreams and More
Pre-Final Grades for CS 154/CS 262 SY 2009-2010
Botan, the C++ Crypto Library, built for Fedora 12 with Python Bindings Enabled
Barry, the Blackberry Sync Tool, Built for Fedora 12
Apple iSlate: Game Changer?
Philippine-based All Skype Call Center
JPype 0.5.4 RPM Packages for Fedora 11
Sympy 0.6.5 RPM Packages for Fedora 11
Pre-Final Grades for CS 262 SY 2008-2009
First flow-tools update in nearly three (3) years!
iPhone 3G Unlock is available … now!

Slashdot
News for nerds, stuff that matters
MetaLab Accuses Mozilla of Ripping Off UI Elements In Mockups
William Shatner Takes On Social Networking
Researchers Beam 230Mb/sec Wireless Internet WIth LEDs
SolarPHP 1.0 Released
Best Smartphone Plan Covering US and Canada?
Pennsylvania CISO Fired Over Talk At RSA Conference
Half-Male, Half-Female Fowl Explain Birds' Sex Determination
T-Mobile's First HSPA+ Modem Goes On Sale Sunday
EMI Cannot Unbundle Pink Floyd Songs
Bill To Ban All Salt In Restaurant Cooking
The 10 Most Absurd Scientific Papers
Multitasking In For iPhone 4.0?
IE 6 & 7 Unpatched Exploit Goes Wild
Apple Blocking iPhone Security Software
Drizzle's Future Moving To Rackspace?


Stuff
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For any Questions, Comments or Suggestions
please email me at wyu at ateneo dot edu

Academic and Course Website (Release 3.2)
© 2001-2005, William Emmanuel S. Yu